The Department of Computer Science and Technology manages the following research labs that are funded by the Chinese government or industry partners.

1. State Key Laboratory of Intelligent Technology and Systems

2. MOE-Key Laboratory of Pervasive Computing

3. MOE-Microsoft Key Laboratory of Media and Networking

4. Intelligent Processing of Visual Media and Content Security Beijing Higher Education Engineering Research Center

5. Center for Cryptology Study, Tsinghua University

6. Tsinghua University and the University of Waterloo Joint Research Centre on Internet Information

7. Tsinghua University - National University of Singapore Joint Research Centre on Next Generation Search Technology

8. Tsinghua University - Hewlett-Packard Co., Ltd. Joint Laboratory on Multimedia

9. Tsinghua University (Department of Computer Science and Technology) - Beijing Sohu Internet Information Service Co., Ltd. Joint Laboratory on Search Technology

10. Tsinghua University (Department of Computer Science and Technology) –Tencent Technology (Shenzhen) Co., Ltd. Joint Laboratory for Internet Innovation Technology

11. Wireless Sensor Network Research Center at Tsinghua University (Department of Computer Science and Technology)

12. Research Center for Internet Services and Systems at Tsinghua University (Department of Computer Science and Technology)